A modified harmony search method for biclustering microarray gene expression data Online publication date: Sun, 12-Feb-2017
by R. Balamurugan; A.M. Natarajan; K. Premalatha
International Journal of Data Mining and Bioinformatics (IJDMB), Vol. 16, No. 4, 2016
Abstract: Microarray experiments generate vast amounts of data, leading to new requirements and challenges for bioinformatics. The crucial step in considering gene expression data is to discover a group of genes that have similar patterns. Biclustering is a two-dimensional clustering problem where the genes and samples are grouped simultaneously. Latest research showed that biclustering has a great potential in finding marker genes that are associated with certain tissues or diseases. Here, we present an efficient biclustering algorithm called Modified Harmony Search (MHS) method. The MHS algorithm includes a step for generating the new solution by using levy flight. Levy flight increases the diversity of the solutions of harmony search (HS) algorithm and the Pitch Adjusting Rate (PAR) is changed dynamically to escape from local optima. To know the performance of the MHS, it is applied on various benchmark optimisation functions and the benchmark gene expression data sets. The experimental results show that the MHS outperforms HS in optimisation functions and biclustering problems. Also, this work determines the biological relevance of the biclusters with Gene Ontology in terms of function, process and component.
Existing subscribers:
Go to Inderscience Online Journals to access the Full Text of this article.
If you are not a subscriber and you just want to read the full contents of this article, buy online access here.Complimentary Subscribers, Editors or Members of the Editorial Board of the International Journal of Data Mining and Bioinformatics (IJDMB):
Login with your Inderscience username and password:
Want to subscribe?
A subscription gives you complete access to all articles in the current issue, as well as to all articles in the previous three years (where applicable). See our Orders page to subscribe.
If you still need assistance, please email subs@inderscience.com