CarGene: Characterisation of sets of genes based on metabolic pathways analysis Online publication date: Sat, 24-Jan-2015
by Jesus S. Aguilar-Ruiz; Domingo S. Rodriguez-Baena; Norberto Diaz-Diaz; Isabel A. Nepomuceno-Chamorro
International Journal of Data Mining and Bioinformatics (IJDMB), Vol. 5, No. 5, 2011
Abstract: The great amount of biological information provides scientists with an incomparable framework for testing the results of new algorithms. Several tools have been developed for analysing gene-enrichment and most of them are Gene Ontology-based tools. We developed a Kyoto Encyclopedia of Genes and Genomes (Kegg)-based tool that provides a friendly graphical environment for analysing gene-enrichment. The tool integrates two statistical corrections and simultaneously analysing the information about many groups of genes in both visual and textual manner. We tested the usefulness of our approach on a previous analysis (Huttenshower et al.). Furthermore, our tool is freely available (http://www.upo.es/eps/bigs/cargene.html).
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